Genomic Data Science and Clustering (Bioinformatics V)

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课程主页: https://www.coursera.org/archive/genomic-data

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University of California, San Diego

课程大纲

Welcome to class!

At the beginning of the class, we will see how algorithms for clustering a set of data points will help us determine how yeast became such good wine-makers. At the bottom of this email is the Bioinformatics Cartoon for this chapter, courtesy of Randall Christopher and serving as a chapter header in the Specialization's bestselling print companion. How did the monkey lose a wine-drinking contest to a tiny mammal?  Why have Pavel and Phillip become cavemen? And will flipping a coin help them escape their eternal boredom until they can return to the present? Start learning to find out!

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How do we infer which genes orchestrate various processes in the cell? How did humans migrate out of Africa and spread around the world? In this class, we will see that these two seemingly different questions can be addressed using similar algorithmic and machine learning techniques arising from the general problem of dividing data points into distinct clusters. In the first half of the course, we will introduce algorithms for clustering a group of objects into a collection of clusters based on their similarity, a classic problem in data science, and see how these algorithms can be applied to gene expression data. In the second half of the course, we will introduce another classic tool in data science called principal components analysis that can be used to preprocess multidimensional data before clustering in an effort to greatly reduce the number dimensions without losing much of the "signal" in the data. Finally, you will learn how to apply popular bioinformatics software tools to solve a real problem in clustering.

基因组数据科学与聚类(生物信息学V):我们如何推断哪些基因协调了细胞的各种过程?人类如何迁出非洲并在世界各地扩散?在这一节课中,我们将看到可以使用相似的算法和机器学习技术来解决这两个看似不同的问题,这是由于将数据点划分为不同的群集而产生的。 在课程的前半部分,我们将介绍基于对象的相似性将一组对象聚类为一组聚类的算法,这是数据科学中的经典问题,并介绍如何将这些算法应用于基因表达数据。 在课程的下半部分,我们将介绍数据科学中的另一种经典工具,称为主成分分析,可用于在聚类之前对多维数据进行预处理,以在不损失大量“信号”的情况下大大减少维数。数据。 最后,您将学习如何应用流行的生物信息学软件工具来解决集群中的实际问题。

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