Experimental Methods in Systems Biology

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课程主页: https://www.coursera.org/archive/experimental-methods

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Icahn School of Medicine at Mount Sinai

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Learn about the technologies underlying experimentation used in systems biology, with particular focus on RNA sequencing, mass spec-based proteomics, flow/mass cytometry and live-cell imaging. A key driver of the systems biology field is the technology allowing us to delve deeper and wider into how cells respond to experimental perturbations. This in turns allows us to build more detailed quantitative models of cellular function, which can give important insight into applications ranging from biotechnology to human disease. This course gives a broad overview of a variety of current experimental techniques used in modern systems biology, with focus on obtaining the quantitative data needed for computational modeling purposes in downstream analyses. We dive deeply into four technologies in particular, mRNA sequencing, mass spectrometry-based proteomics, flow/mass cytometry, and live-cell imaging. These techniques are often used in systems biology and range from genome-wide coverage to single molecule coverage, millions of cells to single cells, and single time points to frequently sampled time courses. We present not only the theoretical background upon which these technologies work, but also enter real wet lab environments to provide instruction on how these techniques are performed in practice, and how resultant data are analyzed for quality and content.

系统生物学中的实验方法:了解系统生物学中用于实验的基础技术,尤其侧重于RNA测序,基于质谱的蛋白质组学,流/质细胞术和活细胞成像。 系统生物学领域的关键推动力是这项技术,它使我们能够更深入地研究细胞如何响应实验扰动。反过来,这使我们能够建立更详细的细胞功能定量模型,从而可以深入了解从生物技术到人类疾病的各种应用。本课程概述了现代系统生物学中使用的各种当前实验技术,重点是获得下游分析中计算模型所需的定量数据。我们将深入研究四种技术,特别是mRNA测序,基于质谱的蛋白质组学,流/质细胞术和活细胞成像。这些技术通常用于系统生物学,范围从全基因组覆盖到单分子覆盖,从数百万个细胞到单个细胞,以及从单个时间点到经常采样的时间过程。我们不仅介绍了这些技术的理论背景,而且还进入了实际的湿实验室环境,以提供有关如何在实践中执行这些技术以及如何分析所得数据的质量和内容的指导。

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