Finding Hidden Messages in DNA (Bioinformatics I)

开始时间: 04/22/2022 持续时间: Unknown

所在平台: CourseraArchive

课程类别: 其他类别

大学或机构: CourseraNew

课程主页: https://www.coursera.org/archive/dna-analysis

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Named a top 50 MOOC of all time by Class Central! This course begins a series of classes illustrating the power of computing in modern biology. Please join us on the frontier of bioinformatics to look for hidden messages in DNA without ever needing to put on a lab coat. In the first half of the course, we investigate DNA replication, and ask the question, where in the genome does DNA replication begin? We will see that we can answer this question for many bacteria using only some straightforward algorithms to look for hidden messages in the genome. In the second half of the course, we examine a different biological question, when we ask which DNA patterns play the role of molecular clocks. The cells in your body manage to maintain a circadian rhythm, but how is this achieved on the level of DNA? Once again, we will see that by knowing which hidden messages to look for, we can start to understand the amazingly complex language of DNA. Perhaps surprisingly, we will apply randomized algorithms, which roll dice and flip coins in order to solve problems. Finally, you will get your hands dirty and apply existing software tools to find recurring biological motifs within genes that are responsible for helping Mycobacterium tuberculosis go "dormant" within a host for many years before causing an active infection.

查找DNA中的隐藏消息(生物信息学I):被Class Central评为有史以来前50名MOOC! 本课程开始一系列课程,说明现代生物学中计算的功能。请加入我们在生物信息学前沿的研究,以寻找DNA中隐藏的信息,而无需穿上实验服。 在课程的前半部分,我们将研究DNA复制,并提出一个问题:DNA复制在基因组中的何处开始?我们将看到,仅使用一些简单的算法即可在基因组中寻找隐藏的信息,从而可以回答许多细菌的这个问题。 在课程的后半部分,当我们询问哪种DNA模式在分子钟中发挥作用时,我们将研究另一个生物学问题。您体内的细胞设法维持昼夜节律,但是如何在DNA水平上实现呢?再一次,我们将看到,通过知道要查找的隐藏消息,我们可以开始理解令人惊奇的DNA语言。也许令人惊讶的是,我们将应用随机算法,该算法掷骰子并掷硬币以解决问题。 最后,您将动手操作,并使用现有的软件工具查找基因内的重复生物基序,这些基序可帮助结核分枝杆菌在宿主内多年“休眠”,从而导致主动感染。

课程大纲

Welcome to class!

This course will focus on two questions at the forefront of modern computational biology, along with the algorithmic approaches we will use to solve them in parentheses:

  1. Weeks 1-2: Where in the Genome Does DNA Replication Begin? (Algorithmic Warmup)
  2. Weeks 3-4: Which DNA Patterns Play the Role of Molecular Clocks? (Randomized Algorithms)

Week 5 will consist of a Bioinformatics Application Challenge in which you will get to apply software for finding DNA motifs to a real biological dataset.

Each of the two chapters in the course is accompanied by a Bioinformatics Cartoon created by Randall Christopher and serving as a chapter header in the Specialization's bestselling print companion. You can find the first chapter's cartoon at the bottom of this message. What does a cryptic message leading to buried treasure have to do with biology? We hope you will join us to find out!

Phillip and Pavel

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Named a top 50 MOOC of all time by Class Central! This course begins a series of classes illustrati

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