Getting started in cryo-EM

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课程主页: https://www.coursera.org/archive/cryo-em

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Caltech

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This class covers the fundamental principles underlying cryo-electron microscopy (cryo-EM) starting with the basic anatomy of electron microscopes, an introduction to Fourier transforms, and the principles of image formation. Building upon that foundation, the class then covers the sample preparation issues, data collection strategies, and basic image processing workflows for all 3 basic modalities of modern cryo-EM: tomography, single particle analysis, and 2-D crystallography. Philosophy: The course emphasizes concepts rather than mathematical details, taught through numerous drawings and example images. It is meant for anyone interested in the burgeoning fields of cryo-EM and 3-D EM, including cell biologists or molecular biologists without extensive training in mathematics or imaging physics and practicing electron microscopists who want to broaden their understanding of the field. The class is perfect as a primer for anyone who is about to be trained as a cryo-electron microscopist, or for anyone who needs an introduction to the field to be able to understand the literature or the talks and conversations they will hear at cryo-EM meetings. Pre-requisites: The recommended prerequisites are college-freshman-level math, physics, and biochemistry. Pace: There are 14.5 hours of lecture videos total separated into 40 individual “modules” lasting on average 20 minutes each. Each module has at the end a list of “concept check” questions you can use to test your knowledge of what was presented. As the modules are grouped into seven major subjects, one reasonable plan would be to go through one major subject each day. That would mean watching a couple hours of lecture and spending another hour or so thinking through the concept check questions each day for a week. Another reasonable plan would be to go through one module each day for a little over a month, or even three modules a week (Monday, Wednesday, and Friday) for a 3-month term. It is likely that as you then move on to actually begin using a cryo-EM or otherwise engage in the field, you will want to repeat certain modules.

低温EM入门:本课程涵盖了低温电子显微镜(cryo-EM)的基本原理,从电子显微镜的基本解剖结构开始,对傅立叶变换进行了介绍,并介绍了图像形成的原理。然后,在此基础上,该课程介绍了现代低温EM的所有3种基本模式的样品制备问题,数据收集策略和基本图像处理工作流程:层析成像,单颗粒分析和二维晶体学。 哲学: 本课程通过大量绘图和示例图像来讲授概念,而不是数学细节。它适用于对低温EM和3-D EM新兴领域感兴趣的任何人,包括细胞生物学家或分子生物学家,而他们没有经过数学或成像物理学方面的广泛培训,也没有想要扩大他们对该领域理解的实践电子显微学家。该课程非常适合即将接受冷冻电子显微技术培训的人员,或者需要该领域入门知识以便能够理解文学作品或他们将在冷冻室听到的谈话和对话的入门人员。 EM会议。 先决条件: 建议的先决条件是大学新生水平的数学,物理和生物化学。 步伐: 总共有14.5个小时的讲座视频,分为40个单独的“模块”,每个模块平均持续20分钟。每个模块最后都有一个“概念检查”问题列表,您可以使用这些问题来测试对所呈现内容的了解。由于这些模块分为七个主要主题,因此一项合理的计划是每天都要完成一个主要主题。这意味着要看几个小时的讲座,然后花一个小时左右的时间思考一周中的概念检查问题。另一个合理的计划是每天进行一个模块学习一个月以上,或者甚至三个星期每周(星期一,星期三和星期五)经历三个模块。 然后,当您继续实际开始使用cryo-EM或以其他方式参与该领域时,您可能需要重复某些模块。

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