Bioinformatic Methods I

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课程主页: https://www.coursera.org/archive/bioinformatics-methods-1

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课程简介

University of Toronto

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In this module we'll be exploring the amazing resources available at NCBI, the National Centre for Biotechnology Information, run by the National Library of Medicine in the USA. We'll also be doing a Blast search to find similar sequences in the enormous NR sequence database. We can use similar sequences to infer homology, which is the primary predictor of gene or protein function.

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Large-scale biology projects such as the sequencing of the human genome and gene expression surveys using RNA-seq, microarrays and other technologies have created a wealth of data for biologists. However, the challenge facing scientists is analyzing and even accessing these data to extract useful information pertaining to the system being studied. This course focuses on employing existing bioinformatic resources – mainly web-based programs and databases – to access the wealth of data to answer questions relevant to the average biologist, and is highly hands-on. Topics covered include multiple sequence alignments, phylogenetics, gene expression data analysis, and protein interaction networks, in two separate parts. The first part, Bioinformatic Methods I (this one), deals with databases, Blast, multiple sequence alignments, phylogenetics, selection analysis and metagenomics. The second part, Bioinformatic Methods II, covers motif searching, protein-protein interactions, structural bioinformatics, gene expression data analysis, and cis-element predictions. This pair of courses is useful to any student considering graduate school in the biological sciences, as well as students considering molecular medicine. Both provide an overview of the many different bioinformatic tools that are out there. These courses are based on one taught at the University of Toronto to upper-level undergraduates who have some understanding of basic molecular biology. If you're not familiar with this, something like https://learn.saylor.org/course/bio101 might be helpful. No programming is required for this course. Bioinformatic Methods I is regularly updated, and was last updated for January 2019.

生物信息学方法I:大规模的生物学项目,例如使用RNA序列,微阵列和其他技术进行的人类基因组测序和基因表达调查,为生物学家创造了大量数据。但是,科学家面临的挑战是分析甚至访问这些数据以提取与正在研究的系统有关的有用信息。本课程侧重于利用现有的生物信息资源(主要是基于Web的程序和数据库)来访问大量数据,以回答与普通生物学家有关的问题,并且非常动手。 涵盖的主题包括两个独立的部分中的多个序列比对,系统发育,基因表达数据分析和蛋白质相互作用网络。 第一部分,生物信息学方法I(本部分)涉及数据库,Blast,多个序列比对,系统发育,选择分析和宏基因组学。 第二部分,《生物信息学方法II》,涵盖了基序搜索,蛋白质-蛋白质相互作用,结构生物信息学,基因表达数据分析和顺式元素预测。 这两门课程对所有考虑攻读生物科学研究生院的学生以及考虑分子医学的学生都非常有用。两者都概述了许多不同的生物信息学工具。 这些课程是基于多伦多大学教授的一门课程,面向对基本分子生物学有一定了解的高级本科生。如果您不熟悉此方法,则可能会有用如https://learn.saylor.org/course/bio101。本课程无需编程。 生物信息学方法I定期进行更新,最后更新于2019年1月。

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